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Trimming heaps is a balance between saving memory and the system overhead
required to update page tables and discard allocated pages. The malloc
option M_TRIM_THRESHOLD is a tunable that users are meant to use to decide
where this balance point is but it is only applied to the main arena.
For scalability reasons, glibc malloc has per-thread heaps but these are
shrunk with madvise() if there is one page free at the top of the heap.
In some circumstances this can lead to high system overhead if a thread
has a control flow like
while (data_to_process) {
buf = malloc(large_size);
do_stuff();
free(buf);
}
For a large size, the free() will call madvise (pagetable teardown, page
free and TLB flush) every time followed immediately by a malloc (fault,
kernel page alloc, zeroing and charge accounting). The kernel overhead
can dominate such a workload.
This patch allows the user to tune when madvise gets called by applying
the trim threshold to the per-thread heaps and using similar logic to the
main arena when deciding whether to shrink. Alternatively if the dynamic
brk/mmap threshold gets adjusted then the new values will be obeyed by
the per-thread heaps.
Bug 17195 was a test case motivated by a problem encountered in scientific
applications written in python that performance badly due to high page fault
overhead. The basic operation of such a program was posted by Julian Taylor
https://sourceware.org/ml/libc-alpha/2015-02/msg00373.html
With this patch applied, the overhead is eliminated. All numbers in this
report are in seconds and were recorded by running Julian's program 30
times.
pyarray
glibc madvise
2.21 v2
System min 1.81 ( 0.00%) 0.00 (100.00%)
System mean 1.93 ( 0.00%) 0.02 ( 99.20%)
System stddev 0.06 ( 0.00%) 0.01 ( 88.99%)
System max 2.06 ( 0.00%) 0.03 ( 98.54%)
Elapsed min 3.26 ( 0.00%) 2.37 ( 27.30%)
Elapsed mean 3.39 ( 0.00%) 2.41 ( 28.84%)
Elapsed stddev 0.14 ( 0.00%) 0.02 ( 82.73%)
Elapsed max 4.05 ( 0.00%) 2.47 ( 39.01%)
glibc madvise
2.21 v2
User 141.86 142.28
System 57.94 0.60
Elapsed 102.02 72.66
Note that almost a minutes worth of system time is eliminted and the
program completes 28% faster on average.
To illustrate the problem without python this is a basic test-case for
the worst case scenario where every free is a madvise followed by a an alloc
/* gcc bench-free.c -lpthread -o bench-free */
static int num = 1024;
void __attribute__((noinline,noclone)) dostuff (void *p)
{
}
void *worker (void *data)
{
int i;
for (i = num; i--;)
{
void *m = malloc (48*4096);
dostuff (m);
free (m);
}
return NULL;
}
int main()
{
int i;
pthread_t t;
void *ret;
if (pthread_create (&t, NULL, worker, NULL))
exit (2);
if (pthread_join (t, &ret))
exit (3);
return 0;
}
Before the patch, this resulted in 1024 calls to madvise. With the patch applied,
madvise is called twice because the default trim threshold is high enough to avoid
this.
This a more complex case where there is a mix of frees. It's simply a different worker
function for the test case above
void *worker (void *data)
{
int i;
int j = 0;
void *free_index[num];
for (i = num; i--;)
{
void *m = malloc ((i % 58) *4096);
dostuff (m);
if (i % 2 == 0) {
free (m);
} else {
free_index[j++] = m;
}
}
for (; j >= 0; j--)
{
free(free_index[j]);
}
return NULL;
}
glibc 2.21 calls malloc 90305 times but with the patch applied, it's
called 13438. Increasing the trim threshold will decrease the number of
times it's called with the option of eliminating the overhead.
ebizzy is meant to generate a workload resembling common web application
server workloads. It is threaded with a large working set that at its core
has an allocation, do_stuff, free loop that also hits this case. The primary
metric of the benchmark is records processed per second. This is running on
my desktop which is a single socket machine with an I7-4770 and 8 cores.
Each thread count was run for 30 seconds. It was only run once as the
performance difference is so high that the variation is insignificant.
glibc 2.21 patch
threads 1 10230 44114
threads 2 19153 84925
threads 4 34295 134569
threads 8 51007 183387
Note that the saving happens to be a concidence as the size allocated
by ebizzy was less than the default threshold. If a different number of
chunks were specified then it may also be necessary to tune the threshold
to compensate
This is roughly quadrupling the performance of this benchmark. The difference in
system CPU usage illustrates why.
ebizzy running 1 thread with glibc 2.21
10230 records/s 306904
real 30.00 s
user 7.47 s
sys 22.49 s
22.49 seconds was spent in the kernel for a workload runinng 30 seconds. With the
patch applied
ebizzy running 1 thread with patch applied
44126 records/s 1323792
real 30.00 s
user 29.97 s
sys 0.00 s
system CPU usage was zero with the patch applied. strace shows that glibc
running this workload calls madvise approximately 9000 times a second. With
the patch applied madvise was called twice during the workload (or 0.06
times per second).
2015-02-10 Mel Gorman <mgorman@suse.de>
[BZ #17195]
* malloc/arena.c (free): Apply trim threshold to per-thread heaps
as well as the main arena.
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This directory contains the sources of the GNU C Library. See the file "version.h" for what release version you have. The GNU C Library is the standard system C library for all GNU systems, and is an important part of what makes up a GNU system. It provides the system API for all programs written in C and C-compatible languages such as C++ and Objective C; the runtime facilities of other programming languages use the C library to access the underlying operating system. In GNU/Linux systems, the C library works with the Linux kernel to implement the operating system behavior seen by user applications. In GNU/Hurd systems, it works with a microkernel and Hurd servers. The GNU C Library implements much of the POSIX.1 functionality in the GNU/Hurd system, using configurations i[4567]86-*-gnu. The current GNU/Hurd support requires out-of-tree patches that will eventually be incorporated into an official GNU C Library release. When working with Linux kernels, this version of the GNU C Library requires Linux kernel version 2.6.32 or later. Also note that the shared version of the libgcc_s library must be installed for the pthread library to work correctly. The GNU C Library supports these configurations for using Linux kernels: aarch64*-*-linux-gnu alpha*-*-linux-gnu arm-*-linux-gnueabi hppa-*-linux-gnu Not currently functional without patches. i[4567]86-*-linux-gnu x86_64-*-linux-gnu Can build either x86_64 or x32 ia64-*-linux-gnu m68k-*-linux-gnu microblaze*-*-linux-gnu mips-*-linux-gnu mips64-*-linux-gnu powerpc-*-linux-gnu Hardware or software floating point, BE only. powerpc64*-*-linux-gnu Big-endian and little-endian. s390-*-linux-gnu s390x-*-linux-gnu sh[34]-*-linux-gnu sparc*-*-linux-gnu sparc64*-*-linux-gnu tilegx-*-linux-gnu tilepro-*-linux-gnu If you are interested in doing a port, please contact the glibc maintainers; see http://www.gnu.org/software/libc/ for more information. See the file INSTALL to find out how to configure, build, and install the GNU C Library. You might also consider reading the WWW pages for the C library at http://www.gnu.org/software/libc/. The GNU C Library is (almost) completely documented by the Texinfo manual found in the `manual/' subdirectory. The manual is still being updated and contains some known errors and omissions; we regret that we do not have the resources to work on the manual as much as we would like. For corrections to the manual, please file a bug in the `manual' component, following the bug-reporting instructions below. Please be sure to check the manual in the current development sources to see if your problem has already been corrected. Please see http://www.gnu.org/software/libc/bugs.html for bug reporting information. We are now using the Bugzilla system to track all bug reports. This web page gives detailed information on how to report bugs properly. The GNU C Library is free software. See the file COPYING.LIB for copying conditions, and LICENSES for notices about a few contributions that require these additional notices to be distributed. License copyright years may be listed using range notation, e.g., 1996-2015, indicating that every year in the range, inclusive, is a copyrightable year that would otherwise be listed individually.